RetrogeneDB ID: | retro_fcat_225 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:39195969..39196268(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030114 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 86.14 % |
Parental protein coverage: | 61.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NMFTNQGTVI-HFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD |
.MFTN.GTV..HFNNPKVQASLA.NTFTITG.AETKQLTEMLP..LNQLGADSLT.LRRLAEALPKQSVD | |
Retrocopy | SMFTNHGTVT<HFNNPKVQASLAVNTFTITGRAETKQLTEMLPIVLNQLGADSLTRLRRLAEALPKQSVD |
Parental | GKAPLATGEDDDDEVPDLVENFDEASKNEAN |
GKAPLATGE..DDEVPDL.ENFD.ASKN.AN | |
Retrocopy | GKAPLATGEGNDDEVPDLMENFDDASKNGAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .62 RPM | 162 .11 RPM |
SRP017611_liver | 0 .10 RPM | 109 .78 RPM |