RetrogeneDB ID: | retro_fcat_245 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:104913723..104914110(-) | ||
Located in intron of: | ENSFCAG00000011618 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.44 % |
Parental protein coverage: | 98.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDE-ATLGQCGVEALTTLEVAGRM |
LFV.AQELH.....G.ETVAQIK.HV..LEGIAPEDQVV.LAGTPLEDE..TLGQ.G.EA.TTLEVAG.M | |
Retrocopy | LFVHAQELHPP*GEG*ETVAQIKPHVGWLEGIAPEDQVVPLAGTPLEDE<GTLGQYGEEAPTTLEVAGHM |
Parental | LGGKVHGSLAR-AGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVV-PTFGKK-KGPNANS |
LG.KVHGS.....GKVRG.TP..AK.E..KK.TG.AKR.MQY.........P......KGPNA.S | |
Retrocopy | LGDKVHGSQTH<SGKVRGHTPRLAKEE--KKRTGQAKR*MQYTTGTLSTLCPPLARR<KGPNASS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .10 RPM | 156 .75 RPM |
SRP017611_liver | 0 .10 RPM | 85 .02 RPM |