RetrogeneDB ID: | retro_fcat_249 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:110734504..110734942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.46 % |
Parental protein coverage: | 90.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | AKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAEA |
A.S.NHTTHNQS.K.HRNGIKK..S.RYESLKG.DPKFLRN..FAKKHN.KGLK.MQANNAKAMS..... | |
Retrocopy | ARSTNHTTHNQS*K*HRNGIKKTWS*RYESLKGGDPKFLRNILFAKKHNQKGLKRMQANNAKAMSTHVPK |
Parental | IKALVKPKEVKPKIPK-GGSRKLNRLAYIAHPKLGKRARARIAK-GLRLCRPKAKAKAQTKAQPAAATPA |
..............PK.G.S..L.R..Y.A.PKL.K...A...K.GLRLC..KAKAKAQT.AQ..A...A | |
Retrocopy | LSRPSSSPRNQAQDPK>GDSCNLSRPTYTAFPKLKKWVHAHNVK<GLRLCGSKAKAKAQTEAQGPARSAA |
Parental | PAPAAAQA |
..P..AQA | |
Retrocopy | QTPTSAQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 325 .66 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |