RetrogeneDB ID: | retro_fcat_251 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:116355079..116355442(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYT-INIHKRIHGVGFKKRAP-RALKEIRKFAMKEMGTPDVRIDTRL |
MA..KKG..KKKG.S..NEVVTREYT.INI.K.IH.V.FKK.AP..ALK...KFA.K.M.TPDV..DT.L | |
Retrocopy | MATTKKG-VKKKGCSPTNEVVTREYT<INIQKCIHAVSFKKCAP<LALKDLQKFATKAMETPDVCTDTWL |
Parental | NKAVW-AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
N.AVW.AKGIRNVPY........K..EDEDSPNKLYTLVT.VP.T.FKNL.TVNVDEN | |
Retrocopy | NEAVW<AKGIRNVPYLTCAVVQKK--EDEDSPNKLYTLVT*VPITIFKNL*TVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .10 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |