RetrogeneDB ID: | retro_fcat_273 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:153361506..153361914(-) | ||
Located in intron of: | ENSFCAG00000012405 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 70. % |
Parental protein coverage: | 86.71 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MADIQTERAYQKQPTIF-QNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYI-DK-KCPFTGNVS |
M.DIQT..AYQK..T.F.Q.KKRVLLG.TGKE.L..Y.KNIGLGFK.PKEA.EGT...DK.KCPF.GNVS | |
Retrocopy | MVDIQTKDAYQKHVTTF<QSKKRVLLG*TGKETLL*YCKNIGLGFKMPKEATEGTHL<DK<KCPFPGNVS |
Parental | IRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKT |
I.G.ILSGVVT.MK..RT.VI....LHYI...N.FEK..KN.SVHLSPCFRDVQ..DIVTVG.C.PLS.T | |
Retrocopy | IQGQILSGVVTEMKKERTTVIH*ASLHYIQE*NYFEKGFKNLSVHLSPCFRDVQVSDIVTVGACQPLSQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |