RetrogeneDB ID: | retro_fcat_287 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:200073469..200073816(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19orf70 | ||
Ensembl ID: | ENSFCAG00000011836 | ||
Aliases: | None | ||
Description: | chromosome 19 open reading frame 70 [Source:HGNC Symbol;Acc:33702] |
Percent Identity: | 71.79 % |
Parental protein coverage: | 97.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVPRVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSQAVLQKAEEVVPPAL-YQFSQYVCEQTGLKIPQ |
MVP.VW.LM.FLI.GSVAGG.VYLVYDQELLGPSDKSQ.V..K.EEVVPPA.....S..VCEQT.LKIPQ | |
Retrocopy | MVPQVWLLMMFLIEGSVAGGTVYLVYDQELLGPSDKSQTVPRKSEEVVPPAI<RLVSHCVCEQTSLKIPQ |
Parental | LPAPPKFNFHIRDSWNSGIIKVMSALSAAPSK-ACEYSREGWDYLKE |
.PAPPKFNFHI..SWNS.II.VMSALS.APSK...EY.R.....L.E | |
Retrocopy | FPAPPKFNFHIHRSWNSDIIMVMSALSVAPSKESWEYLRSKLSSLSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 10 .33 RPM |
SRP017611_kidney | 0 .10 RPM | 23 .81 RPM |
SRP017611_liver | 0 .00 RPM | 6 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018796 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000017076 | 2 retrocopies | |
Felis catus | ENSFCAG00000011836 | 1 retrocopy |
retro_fcat_287 ,
|
Loxodonta africana | ENSLAFG00000026050 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000028920 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001268 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006136 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006583 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013386 | 1 retrocopy |