RetrogeneDB ID: | retro_fcat_300 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:216514962..216515634(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL39 | ||
Ensembl ID: | ENSFCAG00000022879 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L39 [Source:HGNC Symbol;Acc:14027] |
Percent Identity: | 65.35 % |
Parental protein coverage: | 66.96 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | PRTEKIEVKHVGKTDPGTI-FVMNKNISTPYSC-AMHLSEWYCGKSILALVDGQPWDMYKPLTKSCEIEF |
PRTEK.E.KHV.K.D...I.FVMNK.IST.Y...A.HLS.W...KS..ALVD.QPWDMY.P.TKS..I.F | |
Retrocopy | PRTEKSEAKHVEKNDADPI<FVMNKTISTLYNL<ARHLSGW*SWKSLPALVDKQPWDMYTPVTKSRGI*F |
Parental | LTFKDRDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVISGAFCYDVVLDKRLDEWMPTKE |
LTFK....GEVN..Y..SCAMMM.C..ERA...E.VVSL.RAPEVP.I.GAFCYD.VL.K.LDEWMPTKE | |
Retrocopy | LTFKGHEQGEVNTSYGHSCAMMMDCMTERALESEHVVSLFRAPEVPAIFGAFCYDTVLEKGLDEWMPTKE |
Parental | NLRSFTKDARALIYKDLPFETLEVE-AKVALEIFQHNKYKTDFIEEKASQNPERIVKLHRFGDFIDVSEG |
NL.SFTK.A..L.YKDLPFETLEVE..K.ALE...HNK.K.D..EEKAS.NPE.I..LHRF.D.I.V..G | |
Retrocopy | NLHSFTKEACPLTYKDLPFETLEVE<SKLALERL*HNKHKIDLVEEKASGNPENIIQLHRFDDLIVVRKG |
Parental | PLIPRTSICFQYEVSAVH |
PL.PRT..C..Y..SA.H | |
Retrocopy | PLSPRTNMCSCYVASADH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .49 RPM |
SRP017611_liver | 0 .00 RPM | 20 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000022879 | 2 retrocopies |
retro_fcat_1817, retro_fcat_300 ,
|
Macropus eugenii | ENSMEUG00000002198 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015959 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006067 | 2 retrocopies |