RetrogeneDB ID: | retro_fcat_302 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:221674525..221674819(-) | ||
Located in intron of: | ENSFCAG00000007961 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66. % |
Parental protein coverage: | 51.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ASTMPPKFDPNEI-KVEYLRCTGGEVGATSALAPKI-GPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ |
ASTMP..FDP..I.KV..L.CT..EV.A.SA.A..I..P.GLSPKK.G.DIAKATGD.K.LRITVKLT.Q | |
Retrocopy | ASTMPLRFDPDGI<KVLHLKCTSEEVSAMSAFAAEI>PPPGLSPKKIGNDIAKATGDGKDLRITVKLTTQ |
Parental | NRQAQIEVVPSASALIIKALKEPPRDRKKQ |
NRQ..I..VPSAS.LI.KAL.E.PRDR... | |
Retrocopy | NRQT*IDMVPSASVLIVKALNELPRDRNRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |