RetrogeneDB ID: | retro_fcat_304 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:231413010..231413456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028863 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSFCAG00000024680 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 67.53 % |
Parental protein coverage: | 51.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYA |
KTD..A.K..VIQ.KN.YNT.KYR.I.RVTNRDI.CQ.AYA..EGDM.VCAA.AHELPKYGVK.GLT.Y. | |
Retrocopy | KTDHHAWKHVVIQGKNRYNTRKYRVIARVTNRDIVCQMAYAHAEGDMLVCAAHAHELPKYGVKAGLTGYT |
Parental | AAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF-GALKG |
AAYC..L.LA.RLL.RFG.DK.YEGQVE.TGDEYN....DGQ.G.FTCY.D.GLART....KV..GA..G | |
Retrocopy | AAYCVHLPLAGRLLTRFGTDKTYEGQVEGTGDEYNMNGTDGQAGPFTCYWDVGLARTAPADKVL<GAVGG |
Parental | AVDGGLSIPHSTKR |
....GL..PH.TKR | |
Retrocopy | ----GLLVPHGTKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 154 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 701 .62 RPM |
SRP017611_liver | 0 .00 RPM | 484 .93 RPM |