RetrogeneDB ID: | retro_fcat_312 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:17653140..17653421(+) | ||
Located in intron of: | ENSFCAG00000027410 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 72.16 % |
Parental protein coverage: | 80.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TPVEPEVAIHRIRITLTSRNVKSL-EKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW |
.P.EPEV.IH....TLTS.N.K.L.EKV...L...AKEKNLK..G.V.MP.KTLRITT.KTPCG.GSKTW | |
Retrocopy | SPREPEVVIHQTTVTLTSHNIKPL<EKVMC*L--EAKEKNLKMDGTVQMPNKTLRITT*KTPCGDGSKTW |
Parental | DRFQMRIHKRLIDLHSPSEIVKQITSI |
D.FQMRIHK.L.DLHSPSEIVKQITSI | |
Retrocopy | DLFQMRIHKQLTDLHSPSEIVKQITSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .21 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |