RetrogeneDB ID: | retro_fcat_329 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:76551175..76552063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK1 | ||
Ensembl ID: | ENSFCAG00000014972 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722] |
Percent Identity: | 87. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEG-VPSTAIREISLLKELRHPNIVSLQDV |
MEDYTKIEKIGEGT.GVV.KGRHKTTGQVVAMKKIRLESEEEG.V.STAI.EISLLKEL.HPNIV.LQDV | |
Retrocopy | MEDYTKIEKIGEGTCGVVCKGRHKTTGQVVAMKKIRLESEEEG<VSSTAIQEISLLKELCHPNIVRLQDV |
Parental | LMQDSRLYLIFEFLSMDLKKYLDSIPPGQFMESSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDK |
LMQ.S.LYLIFE..SMD.KKYLDSIPPG.FMESSLVKSYLYQILQG.VFC.SRRVLHRDLK.QNLLIDDK | |
Retrocopy | LMQGSSLYLIFEVSSMDVKKYLDSIPPGRFMESSLVKSYLYQILQGTVFCYSRRVLHRDLKSQNLLIDDK |
Parental | GTIKLADFGLARAFGIPIRVY-THEVVTLWYRSPEVLL-GSARYSTPVDIWSIGTIFAELATKKPLFHGD |
GTIKLADFGLARAFGIP.R.Y..HEVV.LWYRSPEV.L.GSARYSTPVDIWS.GT.F.EL.TKKPLFHGD | |
Retrocopy | GTIKLADFGLARAFGIPVRIY<PHEVVMLWYRSPEVML<GSARYSTPVDIWSLGTMFTELTTKKPLFHGD |
Parental | SEIDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRIS |
SEID.LFRIFRAL.TPNNEVWPEVESL.DYKNTFPK.KPGSLAS.VKNLD.NGLDL.SKMLVYDPAK..S | |
Retrocopy | SEID*LFRIFRALATPNNEVWPEVESL*DYKNTFPKGKPGSLASRVKNLDGNGLDLFSKMLVYDPAK*VS |
Parental | GKMALNHPYFNDLDNQIKKM |
G.MAL.HPYFNDLDN.IKKM | |
Retrocopy | GTMALIHPYFNDLDNKIKKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .62 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy |
retro_fcat_329 ,
|
Felis catus | ENSFCAG00000029663 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |