RetrogeneDB ID: | retro_fcat_340 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:101383478..101383813(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001938 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.5 % |
Parental protein coverage: | 93.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | PFIAEQRVEDVRLIREQHPTKIPVII-ERYKGEKQLPVLDKTKFLVPDHVNMSE-LIKIISRRR-LQLNA |
P....QR.E..RLI.EQHPTK.P....E.YK.EKQLP.LDKTK....DHVNMS..LI.I.S.R...QLN. | |
Retrocopy | PHTFQQRIEGDRLIQEQHPTKVPGVL>E*YKDEKQLPRLDKTKHHRLDHVNMSD<LIRI-SQRA<IQLNV |
Parental | NQA-FFLLV-NGHSMVSVSTPI-SEVYEREKDEDGFLYMVYASQETFGIK |
NQ...FLLV.N.....S.ST...SE.Y..EKD...FLY.VYASQETF..K | |
Retrocopy | NQT<HFLLV<NRY*VGSISTWV<SEAYQSEKDKEAFLYVVYASQETFRMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .89 RPM |
SRP017611_kidney | 0 .10 RPM | 21 .33 RPM |
SRP017611_liver | 0 .00 RPM | 11 .52 RPM |