RetrogeneDB ID: | retro_fcat_349 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:136417904..136418300(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAGR |
MQL.V.AQELHTL.VT.Q..VA.I.AHVA.LEGIAPEDQVVL.AGT.LEDEATL.QCG.EAL.TLEVA.R | |
Retrocopy | MQLSVHAQELHTLQVTSQDMVAEI*AHVALLEGIAPEDQVVLPAGTVLEDEATLSQCGEEALSTLEVARR |
Parental | MLGGKVHGSLARAGKVRGQTPKVAKQEKKKK-KTGRAKRRMQYNRRFVNVVPTFG-KKKGPNANS |
MLGGKVHGSLA..GKVR.QTPKV.....KKK..TG.AK..MQYN..FV.VVPTF..KKKG.NANS | |
Retrocopy | MLGGKVHGSLAPPGKVRRQTPKVV-KQEKKK>QTGGAKWQMQYNCCFVSVVPTFA<KKKGLNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 156 .75 RPM |
SRP017611_liver | 0 .00 RPM | 85 .02 RPM |