RetrogeneDB ID: | retro_fcat_380 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:71287419..71287790(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.53 % |
Parental protein coverage: | 50.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TDTTVPR-RLGPKRASRIRKLFNLSKEDDVRQYV-VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRI |
TDTTVP....GPKRASR...L.N..KEDDV.Q...VRKPLNKEGKKPRTKA.KIQRLV.P.V.QHKR... | |
Retrocopy | TDTTVPH>ARGPKRASRNLRLYNRLKEDDVCQSL<VRKPLNKEGKKPRTKALKIQRLVPPPVVQHKRWHT |
Parental | ALKKQRTKKNKEEAAEYAKLLAKRMKEAKE-KRQEQIAKRRRLSSLRASTSKSESSQK |
A.K.Q.T.K.K.EAA.YA.L.A.RMKEAKE.K.QEQ.AKRRRLSS..AS.S.SES.QK | |
Retrocopy | AWK-QHTEKHKQEAAGYARLVANRMKEAKE<KHQEQTAKRRRLSSRKASISESESCQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |