RetrogeneDB ID: | retro_fcat_390 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:100935852..100936180(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANAPC16 | ||
Ensembl ID: | ENSFCAG00000010368 | ||
Aliases: | None | ||
Description: | anaphase promoting complex subunit 16 [Source:HGNC Symbol;Acc:26976] |
Percent Identity: | 88.18 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLC-ESVFSYQVASTLKQ |
.AASSSSSSA.GV.GSSVTGSG.SVSDLAPPRKALFTYPKGAGEMLEDGSERFLC..SVFSYQV.S.LKQ | |
Retrocopy | IAASSSSSSAAGVIGSSVTGSGVSVSDLAPPRKALFTYPKGAGEMLEDGSERFLC>KSVFSYQVTSVLKQ |
Parental | VKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSS |
VK.DQQVARM.KLAGLVEELEADEW.FKPIEQLL.FT.SS | |
Retrocopy | VKDDQQVARMKKLAGLVEELEADEWWFKPIEQLLVFTSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .41 RPM | 13 .91 RPM |
SRP017611_liver | 0 .10 RPM | 5 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000014902 | 1 retrocopy | |
Felis catus | ENSFCAG00000010368 | 1 retrocopy |
retro_fcat_390 ,
|
Microcebus murinus | ENSMICG00000004229 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016767 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008215 | 3 retrocopies |