RetrogeneDB ID: | retro_fcat_392 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:108979497..108980236(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | LNIS-FPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPM-KQGVL-T |
LNIS.F.ATGCQK.IEVD.E.KL.TF.EK..ATE.AA..LGEEWKGY.V.ISG..DKQGFP..KQ.VL.T | |
Retrocopy | LNIS<F*ATGCQKFIEVDYEHKLHTFLEKCVATEIAAADLGEEWKGYMV*ISGDGDKQGFPR<KQVVL<T |
Parental | HGRVR-LLLSKGHS-CYRPRRTGERKRKSVRGCIVDANLSVLNLVIVK-KGEKDIPGLTDTTVPRRLGPK |
HGRV..LL....H..C.R.RRTGERK..SVRGCIV.ANL.VLNLVI.K.KGEKDI..L.DTTV....GPK | |
Retrocopy | HGRVHLLLSKRMHD<CRR-RRTGERKHLSVRGCIVYANLRVLNLVILK>KGEKDIL*LIDTTVHHHQGPK |
Parental | RASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKR-RRIALKKQRTKKNKEE |
RASRI.KLF.LSKEDD...YVV.K.LNKEGKKP.TK..K...LV.P...QH......AL.K...KKNKE. | |
Retrocopy | RASRIHKLFDLSKEDDI*HYVVKKHLNKEGKKPGTKTLKVHFLVIPHISQHIH>KKFALEK*HIKKNKEK |
Parental | AAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
AAEYA.LLA.RMKEAKEK.QEQIAKR..L.SLR.STS.SESS.K | |
Retrocopy | AAEYAELLARRMKEAKEKLQEQIAKRWGLFSLRVSTSMSESS*K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |