RetrogeneDB ID: | retro_fcat_416 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:13726112..13726716(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H1FOO | ||
Ensembl ID: | ENSFCAG00000000094 | ||
Aliases: | None | ||
Description: | H1 histone family, member O, oocyte-specific [Source:HGNC Symbol;Acc:18463] |
Percent Identity: | 71.08 % |
Parental protein coverage: | 97.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTAPRKPSEAKEKGPKKPREAKKDPPNPGEVKRGPKKP-REARTGPTKLDAAKEKAPKKGSQTKDQEARL |
MTAPR.P.EAKEKGPK.P..AKKDPPNPGEVKRGP.KP.R...........A.EKAPKKGSQTKDQEARL | |
Retrocopy | MTAPRRPGEAKEKGPKQPTDAKKDPPNPGEVKRGPMKP<RRGEDKVSPKPGAAEKAPKKGSQTKDQEARL |
Parental | SEAKKASQQPDKATQDLPSATGPRGKSKVKGRRSNQDGEAHRKTKAGSQNSKSTVPKDKNSVASPAKKKE |
SEA.KASQQPDKA.Q.LPSA.G..GKSKVKG.R..QDGEAH..TKA.SQ.SKSTVPK.K.S.ASPAKKKE | |
Retrocopy | SEARKASQQPDKASQTLPSAPGSSGKSKVKGARRSQDGEAHMNTKARSQSSKSTVPKGKISDASPAKKKE |
Parental | NKVLKEVVACGAKVGPKAKATAPPRASGSKTVPAPLARKTGAPK-GPRKPCMPTKASSSKLASK |
..V.KE.VA.GA.VGP..KA.AP....GSKT.P..LARKT.APK.GPR.P.MPT.ASSS.L..K | |
Retrocopy | SEVPKEAVAQGANVGPRVKAAAPLGGGGSKTMPEHLARKTEAPK<GPRRPSMPTQASSSTLTYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017209 | 2 retrocopies | |
Felis catus | ENSFCAG00000000094 | 2 retrocopies |
retro_fcat_1139, retro_fcat_416 ,
|
Homo sapiens | ENSG00000178804 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000735 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025226 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029379 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010371 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013414 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015380 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007110 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011276 | 1 retrocopy |