RetrogeneDB ID: | retro_fcat_428 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:65109945..65110289(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000006072 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSFCAG00000013977 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 91.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRD-ISEASVFDAYVLPKLYV |
MTKKRR.NGRAKKG.GHVQPIRCTNCARCVPKDKAIKKFVI.NIVEAAAVRD..SEASVFDAYVLPKLYV | |
Retrocopy | MTKKRRKNGRAKKGLGHVQPIRCTNCARCVPKDKAIKKFVIWNIVEAAAVRD<LSEASVFDAYVLPKLYV |
Parental | KLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
KL.YCVSCAIHSKVVRNRS.EA.KDRTP.P.FRPAGAAPRPPPKPM | |
Retrocopy | KLRYCVSCAIHSKVVRNRSCEAQKDRTPLP*FRPAGAAPRPPPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .94 RPM |
SRP017611_kidney | 1 .34 RPM | 119 .55 RPM |
SRP017611_liver | 0 .30 RPM | 78 .95 RPM |