RetrogeneDB ID: | retro_fcat_434 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:88754060..88754321(+) | ||
Located in intron of: | ENSFCAG00000007598 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 74.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
MV..LTY..RL.YNTASN..RLS.TPGN..VYLYTK.VGKAPKS.CGVC.G.L.GV.AVRP.VL....K. | |
Retrocopy | MVLPLTYHYRLFYNTASNNARLSQTPGNITVYLYTKEVGKAPKSTCGVCQGQL*GVCAVRPIVLRDCLK* |
Parental | KKHVSRAYGGSMCAKCV |
KKHVS..YG.SMCA..V | |
Retrocopy | KKHVSGDYGDSMCAVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |