RetrogeneDB ID: | retro_fcat_439 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:92119282..92119722(+) | ||
Located in intron of: | ENSFCAG00000008756 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 89.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFRRPVLQVFHQFVRRESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGES |
MF.RPVLQVFHQFVR.ESEIASSLVLERSL.RVQLLG.VGQDPVMRQVEGKN.VTIFSLA.NEMWRSGES | |
Retrocopy | MFWRPVLQVFHQFVRCESEIASSLVLERSLKRVQLLGQVGQDPVMRQVEGKNSVTIFSLAMNEMWRSGES |
Parental | EVYQMDLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVD-YGEYTDKNNVRRQATTIIADNI |
E.YQM..GDVSQK.TWHRISVF.PGLRDVAY.YVKKGS.IYVEGKV..YGEYTDKNNVRRQATTIIADN. | |
Retrocopy | EIYQM--GDVSQKMTWHRISVF*PGLRDVAYRYVKKGSCIYVEGKVS<YGEYTDKNNVRRQATTIIADN- |
Parental | IFLSDQTKEKA |
IFLSDQTKEKA | |
Retrocopy | IFLSDQTKEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .10 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |