RetrogeneDB ID: | retro_fcat_46 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:213334175..213334547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022766 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGGEKK..RSAINEVVTREYTINIHKRIHGVGFKKRAPRALK.IRKFAM.EMGTPDV.IDTRLNK | |
Retrocopy | MAPAKKGGEKKD-RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKQIRKFAMQEMGTPDVHIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
AVWAKGIRNVPY.IRVRLSRK.NEDEDSPNKLYTLVTYVPV.TFKNLQTVNVDEN | |
Retrocopy | AVWAKGIRNVPYCIRVRLSRKSNEDEDSPNKLYTLVTYVPVATFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .31 RPM | 155 .41 RPM |
SRP017611_liver | 0 .10 RPM | 108 .77 RPM |