RetrogeneDB ID: | retro_fcat_494 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:91931708..91932693(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPID | ||
Ensembl ID: | ENSFCAG00000028926 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase D [Source:HGNC Symbol;Acc:9257] |
Percent Identity: | 82.14 % |
Parental protein coverage: | 88.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MSHPSPQTKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRA-LCTGEKGIGPTTGKPLHFK |
M.HPSPQT.PSNPSN..VF..VD.GGE.VG.IVLEL.ADIVPKTAE.F.A..CTG.KGIGPTTGKPLHF. | |
Retrocopy | MPHPSPQTQPSNPSNSQVFSEVDVGGEQVG*IVLELLADIVPKTAEKFCA<MCTGDKGIGPTTGKPLHFE |
Parental | GCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGC-NTNGSQFFITTV- |
GCPFH.IIKKFMIQGGDFSNQN.TG.ESIYGEKFEDENFYYKHDQE.L.SMANAGC.NTNGSQFFITTV. | |
Retrocopy | GCPFHQIIKKFMIQGGDFSNQNVTGRESIYGEKFEDENFYYKHDQEDLSSMANAGC>NTNGSQFFITTV> |
Parental | PTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPE |
P.PHLDGKHV..GQVIKGMGVARILENVEVKG.KPAKLCVIAEC.ELKEGDDW.I.PKDGS.DSHP.FPE | |
Retrocopy | PSPHLDGKHVILGQVIKGMGVARILENVEVKGVKPAKLCVIAECKELKEGDDWSISPKDGSDDSHPGFPE |
Parental | DADIDLKDVDKILLITED-LKNIGNT-FFKSQNWEMAI-KKYTKVLRYVEGSKAVIEKADRLKLQPIALS |
DADIDLKD.DK.LLITED.LKNIGNT.FFKSQNWEMAI.KKY.KVLRYVEGSK...E........P.ALS | |
Retrocopy | DADIDLKDIDKMLLITED<LKNIGNT>FFKSQNWEMAI>KKYMKVLRYVEGSKTY*E-SR*IEAAPTALS |
Parental | CVLNIGACKLKMSNWQGAIDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALAD |
C.LNIGACKL.MS.WQGAI.SC.EALEIDPSNTK..Y.RAQGWQGLKE..DQALAD | |
Retrocopy | CELNIGACKLEMSSWQGAIGSCVEALEIDPSNTKSWYYRAQGWQGLKE<IDQALAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .51 RPM |
SRP017611_liver | 0 .00 RPM | 15 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016680 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012069 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001437 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000001046 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012655 | 2 retrocopies | |
Felis catus | ENSFCAG00000028926 | 2 retrocopies |
retro_fcat_494 , retro_fcat_559,
|
Myotis lucifugus | ENSMLUG00000009317 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017768 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000018108 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006602 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003317 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015159 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027408 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001552 | 1 retrocopy |