RetrogeneDB ID: | retro_fcat_526 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:50555317..50556056(+) | ||
Located in intron of: | ENSFCAG00000025121 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027676 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF2F2 | ||
Ensembl ID: | ENSFCAG00000002105 | ||
Aliases: | None | ||
Description: | general transcription factor IIF, polypeptide 2, 30kDa [Source:HGNC Symbol;Acc:4653] |
Percent Identity: | 87.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAERGELDLTGAKQNTGVWLVKVP-KYLSQQWAKAPGRGEVGKLRIAKNQGRTEVSFTLNEDLANIHDIG |
MA...ELDLTGAKQNT.VWL.K.P.KYLSQQWA.A..RG.VGKLRIAKNQGRTEVSFTLNE.LAN.HDIG | |
Retrocopy | MAKLEELDLTGAKQNTRVWLIKFP>KYLSQQWAEASERGKVGKLRIAKNQGRTEVSFTLNEALANSHDIG |
Parental | GKPASVSTP-REHPFVLQSVGGQTLTVFTE-SSSDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSK |
.KPASVSTP.REHPFVLQSVGGQTLTVFTE..SS.KLSLEGIVVQRAEC.PAASENYMRLKRLQIEESSK | |
Retrocopy | RKPASVSTP<REHPFVLQSVGGQTLTVFTE>GSSNKLSLEGIVVQRAECQPAASENYMRLKRLQIEESSK |
Parental | PVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITK |
PVRLS..LDKVVTTNYKPVANHQYNIEYERKKK.DGKRA.ADK.HVLDM.FSAFEKHQYYN.KDLVDITK | |
Retrocopy | PVRLS-HLDKVVTTNYKPVANHQYNIEYERKKK-DGKRAQADK-HVLDMIFSAFEKHQYYNRKDLVDITK |
Parental | QPVGYLKEILKEIGVQNVKGTHKNTWELKPEYRHYQGEEKSD |
Q.VGY.KEILKEIGVQNVKG.HKNTWELKPEYR.YQ.EEKSD | |
Retrocopy | QLVGYVKEILKEIGVQNVKGIHKNTWELKPEYRQYQREEKSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .45 RPM |
SRP017611_liver | 0 .00 RPM | 7 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000028333 | 1 retrocopy | |
Bos taurus | ENSBTAG00000034495 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007391 | 1 retrocopy | |
Felis catus | ENSFCAG00000002105 | 1 retrocopy |
retro_fcat_526 ,
|
Myotis lucifugus | ENSMLUG00000010505 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025484 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002097 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002106 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005868 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000005333 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014092 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000029316 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006891 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002729 | 2 retrocopies |