RetrogeneDB ID: | retro_fcat_527 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:59401504..59402080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026323 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.76 % |
Parental protein coverage: | 61.01 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | ITMDLHASQIQGF-FDIPVDNLYAEPAV-LQWIRENIAEWKNCIIVSPDAGGAKRVTSI-ADRLNVEFAL |
.T.....SQ.Q.F.....VD.L.AE..V.L.WI.EN..E.KN.II..P.AG..K.VT.....RLN.EF.L | |
Retrocopy | VTKQICTSQLQRF*KNSHVDCLCAELIV<LRWIQENTTE*KNPIIAFPHAGSSKSVT*LQTNRLNAEFTL |
Parental | IHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATKVYAILTHGIFSG-PAISR |
IHKERKKAN..DR.V....VK..V.IL..D...T...I.H....LL.A...KV..ILTHG.FS..PAISR | |
Retrocopy | IHKERKKANGMDRVVWF-NVKNCVTILMNDKPGTVANIPHFR-QLLLAKTMKV*DILTHGLFSD<PAISR |
Parental | INNAAFEAVVVTNTIPQEDKMRHCPKIQVID-ISMILAEAIRRTHNGESVSYLFSHVPL |
.N.A.FEAV.V..T.P.EDKM....K......I.MIL.....RTH.GESV.YLFS.VPL | |
Retrocopy | TNKADFEAVIVKTTVPGEDKMKLSSKF*AVA<ILMILMRQ-PRTHKGESVTYLFSCVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 12 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 70 .49 RPM |
SRP017611_liver | 0 .00 RPM | 11 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011662 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003885 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007206 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007577 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005166 | 2 retrocopies | |
Felis catus | ENSFCAG00000012286 | 1 retrocopy | |
Felis catus | ENSFCAG00000026323 | 1 retrocopy |
retro_fcat_527 ,
|
Monodelphis domestica | ENSMODG00000017334 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016087 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001197 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020125 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009452 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007710 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006056 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009917 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003226 | 1 retrocopy |