RetrogeneDB ID: | retro_fcat_541 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:83639455..83640061(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC13 | ||
Ensembl ID: | ENSFCAG00000011245 | ||
Aliases: | None | ||
Description: | SEC13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:10697] |
Percent Identity: | 70.1 % |
Parental protein coverage: | 63.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGC |
...A..SSDGAISLL.YTG..QWEVKKINN.H.IG.NAVS..P...PGSLI.Q.S.QKPN.IKKFAS.GC | |
Retrocopy | MTMAYISSDGAISLLSYTGDDQWEVKKINNTHIIGRNAVS*PPPFEPGSLIVQLSVQKPNCIKKFASSGC |
Parental | DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDISSNTWSPKL |
DNLIKLWKEEE..Q.K..QKL..HSDWV.DVAWA.SI.L.TSTI.S.SQDG..FIWT.D..SSN.W..KL | |
Retrocopy | DNLIKLWKEEETSQQK-KQKLQVHSDWV*DVAWALSISLLTSTITSSSQDGHMFIWTHDNASSNMWLLKL |
Parental | LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSTSVTEGQQNE |
LHKFND.VWHVSWSI.ANIL..SG..NK..LWKES..GQWVC.SDVNK.Q.SV..S.T...QNE | |
Retrocopy | LHKFND-VWHVSWSIMANILPFSGRNNKEALWKESINGQWVCTSDVNKAQDSVPASITADEQNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 91 .62 RPM |
SRP017611_liver | 0 .00 RPM | 27 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005118 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016439 | 2 retrocopies | |
Felis catus | ENSFCAG00000011245 | 1 retrocopy |
retro_fcat_541 ,
|
Homo sapiens | ENSG00000157020 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002401 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030298 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004482 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000017050 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014619 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010628 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004395 | 1 retrocopy |