RetrogeneDB ID: | retro_fcat_543 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:88990364..88990829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS19 | ||
Ensembl ID: | ENSFCAG00000008125 | ||
Aliases: | None | ||
Description: | ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] |
Percent Identity: | 72.96 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LSPGWQRGGRTMPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAS |
LSPGW......M.GV..KDVNQQEFVRAL.A.LKKSGKL.VPEW..TVKLAK.KE.A.Y.EN.FYTRA.S | |
Retrocopy | LSPGWLCTSHAMLGVLAKDVNQQEFVRALEASLKKSGKLIVPEWANTVKLAKLKEAATYNEN*FYTRATS |
Parental | TARHLYLR-GGAGVGSMTKI-YGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQG |
.A.HL....G.A.VGSMTKI..GG.QRNGV.PSHFSRGSKSVA.RVL.ALEGL.MVEKDQDGG.K.TPQG | |
Retrocopy | AA*HLSSE<GSAVVGSMTKI<LGGCQRNGVVPSHFSRGSKSVAHRVLHALEGLEMVEKDQDGGLKVTPQG |
Parental | QRDLDRIAGQVAA-ANKKH |
QRDL.RIA..V...ANKKH | |
Retrocopy | QRDLNRIARLVVM<ANKKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 54 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 225 .90 RPM |
SRP017611_liver | 0 .00 RPM | 119 .19 RPM |