RetrogeneDB ID: | retro_fcat_568 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:134969277..134969665(+) | ||
Located in intron of: | ENSFCAG00000028582 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSFCAG00000001704 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 68.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASRLLRGVGSLAAQALRVRGPNGVAAVRSMASGGGVPTDDEQATGLER-EVMMAARKGLDPYNMLAPKA |
..S.L..GVG.L..QALR...PNGV..V.S.ASG.GVPTDDEQ.TGLE..E.MM.A..GLDP.N.LAPK. | |
Retrocopy | ITSGLSHGVGALFVQALRAHSPNGVTVVCSKASGSGVPTDDEQVTGLEM>EAMMVAWRGLDP*NILAPKT |
Parental | ASGTKEDPNLVPSITNKRIVGCICEEDNSAVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH |
..GTKEDPN.VPS.TN..IVGC.CEEDNSA.IW..LHKGE.Q.CPSCG.HYKLV..QLAH | |
Retrocopy | VLGTKEDPNIVPSVTNNQIVGCMCEEDNSAIIWVKLHKGETQ*CPSCGLHYKLVFYQLAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 105 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 172 .42 RPM |
SRP017611_liver | 0 .00 RPM | 64 .60 RPM |