RetrogeneDB ID: | retro_fcat_58 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:35141132..35141798(-) | ||
Located in intron of: | ENSFCAG00000002859 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025116 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM60A | ||
Ensembl ID: | ENSFCAG00000008955 | ||
Aliases: | None | ||
Description: | family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] |
Percent Identity: | 95.02 % |
Parental protein coverage: | 96.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGS |
MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSK.YEKDFQS.FG.HET.SGDICNACVLLVKRWKKLPAGS | |
Retrocopy | MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKCYEKDFQSSFGSHETGSGDICNACVLLVKRWKKLPAGS |
Parental | KKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQ |
.KNWNHVVDARAGPSLKTTLK.KKVKTLSGN.IKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQ | |
Retrocopy | QKNWNHVVDARAGPSLKTTLKSKKVKTLSGNMIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQ |
Parental | SDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQG |
SDDGSDTEMASGSNRTPVFSFLDLTYWKRQKI.CGIIYKGRFGEVLID.HLFKPCC.NKKAAAEK.EEQG | |
Retrocopy | SDDGSDTEMASGSNRTPVFSFLDLTYWKRQKIRCGIIYKGRFGEVLIDIHLFKPCCNNKKAAAEKLEEQG |
Parental | PEPLPISTQEW |
PEPLPISTQEW | |
Retrocopy | PEPLPISTQEW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 0 .80 RPM |
SRP017611_kidney | 0 .72 RPM | 7 .21 RPM |
SRP017611_liver | 0 .20 RPM | 1 .21 RPM |