RetrogeneDB ID: | retro_fcat_584 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:156978479..156979077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARHGDIA | ||
Ensembl ID: | ENSFCAG00000030567 | ||
Aliases: | None | ||
Description: | Rho GDP dissociation inhibitor (GDI) alpha [Source:HGNC Symbol;Acc:678] |
Percent Identity: | 70.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDK-DDESLRKYKEALLGRVAVSADPNVPN |
M.EQEPTAEQL.Q..AENE.DEH.V.YKP.AQKSIQEIQE.DK.DDE.L.K.KEAL.G.VA.SADP..P. | |
Retrocopy | MVEQEPTAEQLVQTVAENEKDEHWVTYKPAAQKSIQEIQEQDK<DDENLCKNKEALWGCVALSADPAIPK |
Parental | VVVTRLTLVCSTAPGPLELDLTGDLESF-KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK |
VVVT.LTLVCS.A.GP..LDL..DL..F.KKQS.V.K.G.E..IKISF..NREI.S.MKYIQH..R.G.K | |
Retrocopy | VVVTCLTLVCSLALGP--LDL--DLKNF>KKQSSVWK*GMECQIKISFPINREIMSSMKYIQHM*REGIK |
Parental | IDKTD-YMVGSYGPR-AEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWSLTIKKDWKD |
IDKT..Y.VG.Y.PR.AEEY.F..P.E..PKG.LARG.YNIKS.FTD.DKTDHLSWEW.LTIKK..KD | |
Retrocopy | IDKTN<YLVGNYRPR<AEEYKFQSPVERMPKGRLARGIYNIKSCFTDNDKTDHLSWEWNLTIKKEQKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .57 RPM |
SRP017611_liver | 0 .00 RPM | 18 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000030567 | 1 retrocopy |
retro_fcat_584 ,
|
Microcebus murinus | ENSMICG00000002895 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025132 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012215 | 1 retrocopy |