RetrogeneDB ID: | retro_fcat_598 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:202948858..202949202(+) | ||
Located in intron of: | ENSFCAG00000010025 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.38 % |
Parental protein coverage: | 76.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGRMHAPGKGLSQSALPYRR-SVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGN |
.G.MH.P.KG.SQ.A.P....S.P.WL.L.S.DVKEQ...LAK.GL.PSQIGVI..DS.G.AQV..VT.. | |
Retrocopy | VGHMHGPKKGPSQWAPPQGP<SAPIWLRLASKDVKEQTRTLAKTGLAPSQIGVIPTDSGGTAQVHSVTVS |
Parental | KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRL |
.I.RI.KSKGLA.DLPED..HLIKKAVAV...LERNRKDKDAKF.L | |
Retrocopy | NIPRIPKSKGLALDLPEDVHHLIKKAVAV*RRLERNRKDKDAKFLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 54 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 226 .31 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |