RetrogeneDB ID: | retro_fcat_60 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:19307709..19308456(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000012817 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSFCAG00000032017 | ||
Aliases: | None | ||
Description: | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta polypeptide [Source:UniProtKB/TrEMBL;Acc:A8D084] |
Percent Identity: | 72.8 % |
Parental protein coverage: | 94.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK-- |
M....L.QKAKLAEQAERY.DMAA.MKS..E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASLIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKGN |
Parental | TEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.E..E.K....REYREK.ETELR..C..VL.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GDDK | |
Retrocopy | EESSEEKGPEVREYREKVETELRGVCDTVLGLLDTHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDTQGDEA |
.SYKDSTLIMQLLRDNLTLWT.D..G.EA | |
Retrocopy | DSYKDSTLIMQLLRDNLTLWTADNAGEEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 736 .95 RPM |
SRP017611_kidney | 0 .31 RPM | 163 .14 RPM |
SRP017611_liver | 0 .20 RPM | 50 .24 RPM |