RetrogeneDB ID: | retro_fcat_604 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:24843551..24844018(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026266 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UFD1L | ||
Ensembl ID: | ENSFCAG00000004294 | ||
Aliases: | None | ||
Description: | ubiquitin fusion degradation 1 like (yeast) [Source:HGNC Symbol;Acc:12520] |
Percent Identity: | 75.95 % |
Parental protein coverage: | 51.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESAEGEADHSGY |
ACLTTGDV.A.NYNE.IYELRVMETKPDKAV.II.CD.N...D.P.GYKEPERQ........GEADHS.Y | |
Retrocopy | ACLTTGDVVAVNYNE-IYELRVMETKPDKAVPIIGCDVNLELDTPRGYKEPERQFGRRSPPKGEADHSDY |
Parental | AGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPL-VKKVEEDEAGG |
AGELGF.AFSGS..R.D.KKKGV.PSPSP.KPG....GIP.YEFKLGKITFIRNS.PL.V.KV..DEAGG | |
Retrocopy | AGELGFGAFSGSRKRPDRKKKGVGPSPSPVKPGNTRTGIPTYEFKLGKITFIRNSHPL<VRKVQADEAGG |
Parental | RFVAFSGEGQSLRKKGRK |
RFVAFSGEGQSL.KKGRK | |
Retrocopy | RFVAFSGEGQSLCKKGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .52 RPM |
SRP017611_liver | 0 .00 RPM | 43 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000004294 | 1 retrocopy |
retro_fcat_604 ,
|
Homo sapiens | ENSG00000070010 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004104 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002466 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031106 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011580 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006417 | 1 retrocopy |