RetrogeneDB ID: | retro_fcat_609 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:43955600..43956026(-) | ||
Located in intron of: | ENSFCAG00000022079 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSFCAG00000008839 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 71.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LGKCRGLRTARKL-RSHR-RDQKWHDK-QYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIR |
.GKC....TA.KL..SH....QKWHD...Y.KA...TAL.ANPFGGASHAKGIVLEKVGVEAK..N.AIR | |
Retrocopy | MGKCSSFHTAKKL<HSHQ<MHQKWHDQ<KYMKAYVDTALNANPFGGASHAKGIVLEKVGVEAK*LNLAIR |
Parental | KCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGK |
KC.RVQLIK.G.KITAF.PND.C.N.IE.NDEVLV..FG.KGHAV.DIPGV.FK.VKVA...LLAL.KGK | |
Retrocopy | KCLRVQLIKKG*KITAFLPNDCCSNLIEKNDEVLVVRFGCKGHAVSDIPGVCFKAVKVASIVLLALHKGK |
Parental | KERPRS |
KERPRS | |
Retrocopy | KERPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 285 .57 RPM |
SRP017611_liver | 0 .00 RPM | 97 .15 RPM |