RetrogeneDB ID: | retro_fcat_618 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:61630816..61631442(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GRPEL2 | ||
Ensembl ID: | ENSFCAG00000003624 | ||
Aliases: | None | ||
Description: | GrpE-like 2, mitochondrial (E. coli) [Source:HGNC Symbol;Acc:21060] |
Percent Identity: | 78.04 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAARSVWAVRRLVQRLLASSAASEGRGRLHPFSTATQRTAGEDC-SSEDPPDDLGPSLAERALKLKAVKL |
MA..SV.A...LVQ.L.A.SA..EGRG.LHPFSTATQRTA.EDC..SEDPPD.LGPSLAERAL.LKAVK. | |
Retrocopy | MAVWSV*AIQPLVQCLPAFSAVLEGRGSLHPFSTATQRTAEEDC<RSEDPPDALGPSLAERALNLKAVKR |
Parental | EKEVQDLTMRYQRAVADGENIRRRTQRCVEDAKIF-GIQSFCKDLVEVADILEKTTEYISEETEPGDQKL |
EKEVQDLTMRYQRAVAD.ENIR..T...VEDAKI..GIQSFC.DLVEVAD.LE.T.EYISEETEPGDQKL | |
Retrocopy | EKEVQDLTMRYQRAVADDENIRWQTHIYVEDAKIL<GIQSFCTDLVEVADVLERTAEYISEETEPGDQKL |
Parental | TLEKIFRGLSLLE-AKLKS-VFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVALVRQDGYKLH |
TLE.IF..LSLLE..K.K..VFAKHGLEKMT...DK.DPHE.ELICHVP.G.GVQPGTVAL.RQDGYKLH | |
Retrocopy | TLENIFQELSLLE<SKAKE<VFAKHGLEKMTSMDDKHDPHEYELICHVPTGIGVQPGTVALARQDGYKLH |
Parental | GRTI |
G.TI | |
Retrocopy | GHTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .16 RPM |
SRP017611_liver | 0 .00 RPM | 1 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004070 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011142 | 1 retrocopy | |
Felis catus | ENSFCAG00000003624 | 1 retrocopy |
retro_fcat_618 ,
|
Homo sapiens | ENSG00000164284 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005410 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021662 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010160 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016138 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014326 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017396 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005467 | 2 retrocopies |