RetrogeneDB ID: | retro_fcat_638 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:101400517..101400811(-) | ||
Located in intron of: | ENSFCAG00000013539 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.51 % |
Parental protein coverage: | 50.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LGLSPKKVGDDIAKATGDWKGL--RITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSG |
LGLS.KKVGD.I.KAT.DWK.L...ITVKLTIQ.RQAQ..VVPSASALI.KALKE.....KKQKNIKH.G | |
Retrocopy | LGLSSKKVGDGISKATSDWKVLIGKITVKLTIQSRQAQTKVVPSASALIVKALKELSGEKKKQKNIKHGG |
Parental | NITFDEIVNIARQMRHRSLARELSGTIK |
NITFDE.VNIA.QM.H.SLAR.LSGTI. | |
Retrocopy | NITFDEVVNIAQQMQH*SLARNLSGTIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |