RetrogeneDB ID: | retro_fcat_654 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:135403022..135403648(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030152 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSFCAG00000008081 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 83.1 % |
Parental protein coverage: | 92.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
MALSD..VQKQIKHMMAFIEQE.NEKAEEIDAKAEE.FNIEKG.LVQTQRLKIMEYYEKKEKQIEQ..KI | |
Retrocopy | MALSDVGVQKQIKHMMAFIEQESNEKAEEIDAKAEEVFNIEKGCLVQTQRLKIMEYYEKKEKQIEQEEKI |
Parental | QMSNLMNQARLKVLRARDDLITD-LLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPR-MIVRCRK |
QM.NLMN.ARLKVLRAR.DL.TD.LLNEAKQRLSKVVKDT.RY.VL.DG.VLQGL.QLLEPR.MIV.CRK | |
Retrocopy | QMFNLMNEARLKVLRAREDLFTDLLLNEAKQRLSKVVKDTSRYKVLQDGFVLQGLCQLLEPRMMIVHCRK |
Parental | QDFPLVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEEIAGG-VEIYNGDRKIKVSNTLESRLDLIAQQM |
QDFPLV.AAVQKAIPMYKIATKK..DVQI.Q..YLPEEI.GG..EIYN.D.KI..SN.LESRLDL...QM | |
Retrocopy | QDFPLVRAAVQKAIPMYKIATKK--DVQIGQN-YLPEEIGGG<IEIYNRDHKI*ASNPLESRLDLLVPQM |
Parental | MPE |
MPE | |
Retrocopy | MPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 215 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 126 .97 RPM |
SRP017611_liver | 0 .00 RPM | 25 .88 RPM |