RetrogeneDB ID: | retro_fcat_659 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:148474439..148474971(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.65 % |
Parental protein coverage: | 73.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLTHGRVRLLL-SKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGP |
VLTHG.V.LLL.SKGHSCYRPRRT..R.RK.......DANL.VLNLV.VKKGEK.I.G.TD.TVP.RLGP | |
Retrocopy | VLTHGHVQLLLLSKGHSCYRPRRT--RERKG----VMDANLRVLNLVTVKKGEKNISGFTDPTVPHRLGP |
Parental | KRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEE |
K.AS.I...F.LS.EDDV.QYVVRKPL..EGK..RTKA.KIQ.LVTP.VLQHK.R..ALKKQRTKK.KE. | |
Retrocopy | KIASGICNHFSLSEEDDVHQYVVRKPLSNEGKTSRTKARKIQGLVTPCVLQHKHRYTALKKQRTKKDKED |
Parental | AAEYAKLLAKRMKEAK-EKRQEQIAKRRRLSSLRASTSKSESSQ |
AAEYAKLLA.R........R...IAKR.RLSSLRAST.KSESSQ | |
Retrocopy | AAEYAKLLAERKEAKE>SARNR*IAKRWRLSSLRASTFKSESSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |