RetrogeneDB ID: | retro_fcat_66 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:100493169..100493499(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031148 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000029966 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.84 % |
Parental protein coverage: | 85.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASGLQHLLIVAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL |
AS.LQHL..V.MSLPLNPK.FL.GLTGKPVM.KLK..MEYK..LVS.DGYMNMQLAN.E.YIDGA.SGH. | |
Retrocopy | ASSLQHLIVVTMSLPLNPKTFLKGLTGKPVMTKLKSRMEYKDHLVSADGYMNMQLANAEKYIDGASSGHF |
Parental | GEVLIRCNNVLYIRGVEEEEEDGEM |
..V...CNNVLY.RGVEEEEEDGEM | |
Retrocopy | SQVITGCNNVLYNRGVEEEEEDGEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .04 RPM |
SRP017611_liver | 0 .00 RPM | 3 .64 RPM |