RetrogeneDB ID: | retro_fcat_667 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:164377441..164378263(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026490 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTFR1L | ||
Ensembl ID: | ENSFCAG00000012794 | ||
Aliases: | None | ||
Description: | mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836] |
Percent Identity: | 66.07 % |
Parental protein coverage: | 88.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LPRSCLVLQAQEPVEMSAMEANVTIPIWQNKPHGAARSVVRRIGTNL-PLKPCPRASFQT-LPNISDLCL |
LP.SCL.LQ.QEPVE.S.MEANVTIPIWQNKPHG...SVVR..GTNL.PLKPCP.ASF.T..P....... | |
Retrocopy | LPSSCLALQVQEPVEISGMEANVTIPIWQNKPHGSTQSVVRKTGTNL>PLKPCPWASFETPYPTCLTCV* |
Parental | RDVPP-VPTLADIAWIA-ADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPA |
R..PP..P.LAD.AW.A..DEEE.Y.RVRSDT..LRHTWKPSPL.V.Q.NASVPNLRGS......L..PA | |
Retrocopy | RMCPP<IPALADTAWNA<CDEEEIYVRVRSDTWLLRHTWKPSPLTVTQHNASVPNLRGSKVTIF-LTIPA |
Parental | LPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITE |
L.ALSRT..LQDEL..L..QIAKI.A.D..S.SLT.DFLSPGSSNVS.PLP.FGSS.H.TTSF.IS.IT. | |
Retrocopy | LSALSRTAVLQDELNYLHGQIAKIAASDTPSVSLTTDFLSPGSSNVSPPLPGFGSSLHCTTSFAISGITK |
Parental | ETEVEVPELPSVPLLCSASPECCKPEHKA-TCSSSEE-DDCVSLSKASSFADMMGILKDFHRMKQSQDLS |
ET.VEVPELP.....CS..P......H......SS.E.DDCVSLSKASS.AD.MGIL.DFH.M.QS.DL. | |
Retrocopy | ETKVEVPELP-LXXXCSVLPALKAANHNT>SNHSSSEEDDCVSLSKASSSADIMGILEDFHQMEQSLDLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .47 RPM |
SRP017611_liver | 0 .00 RPM | 12 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000012794 | 1 retrocopy |
retro_fcat_667 ,
|
Macropus eugenii | ENSMEUG00000016175 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000010738 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012479 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004314 | 1 retrocopy |