RetrogeneDB ID: | retro_fcat_669 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:174126756..174127037(-) | ||
Located in intron of: | ENSFCAG00000000032 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.84 % |
Parental protein coverage: | 58.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PSPADHEKYGGDPQHPHKLHIVTRIKSTKRRPY-WEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHL |
PSPADHEK.GGDPQHPHKLHIVTR..ST...PY.WEKD.IKML.LE....P.VHK.IP..NAKLKVVKHL | |
Retrocopy | PSPADHEKHGGDPQHPHKLHIVTRKTSTRICPY<WEKDRIKMLRLENTRAPAVHKSIPPANAKLKVVKHL |
Parental | IRIQPLKLPQGLPAEEDMSNTCLKS |
IRI.PLKLPQGLPAEED.S.T.L.S | |
Retrocopy | IRIKPLKLPQGLPAEEDPSGTRLGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .19 RPM |
SRP017611_liver | 0 .00 RPM | 8 .39 RPM |