RetrogeneDB ID: | retro_fcat_676 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:197819310..197819746(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023787 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 77.03 % |
Parental protein coverage: | 94.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RLVLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG-EKFDDEN |
R....LFADK..KTAE.F.ALSTGEKGFGYKG.CFHRII.G.MCQGGDFT.HN.TGGKSIYG.EKFDD.N | |
Retrocopy | RISFELFADKILKTAETFCALSTGEKGFGYKGLCFHRIILGSMCQGGDFTCHNPTGGKSIYG<EKFDDGN |
Parental | FILKHTGPGILSMANAGPNT-NGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKI |
F.LKHTGPGILSM.NAG.N...GS.FF.CT.K.EWLDGKHVVFG.VKE..NI...MERFGSR..KTSKKI | |
Retrocopy | FVLKHTGPGILSMMNAGSNV<DGSRFFFCTTKPEWLDGKHVVFGKVKECTNIAKVMERFGSRSRKTSKKI |
Parental | TIADCGQI |
.IADCGQI | |
Retrocopy | GIADCGQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |