RetrogeneDB ID: | retro_fcat_684 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:12382554..12382912(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022343 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 78.33 % |
Parental protein coverage: | 77.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQ |
GEKGFGYKGSC.HRII.GF.C.GGD.TRHNGTG.KS..GEK.DDEN...KHTGPGI.S.ANAGPNTNGSQ | |
Retrocopy | GEKGFGYKGSCLHRIILGFTCRGGDVTRHNGTGSKSASGEKLDDENLMPKHTGPGISSAANAGPNTNGSQ |
Parental | FFICTAKTEWLDGKHVVFGMVKEGMNIVE-AMERFGSRNGKTSKKITIAD |
FF.C.AKTEWLDGK.VVFG.V.EG.N.VE.A.E.FGSR.GKTSKK.TIAD | |
Retrocopy | FFMCAAKTEWLDGKRVVFGKVREGRNLVE>AAEGFGSRDGKTSKKVTIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |