RetrogeneDB ID: | retro_fcat_689 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:32262619..32263006(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB9 | ||
Ensembl ID: | ENSFCAG00000004678 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa [Source:HGNC Symbol;Acc:7704] |
Percent Identity: | 54.2 % |
Parental protein coverage: | 69.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KRALRHLESYCV---HRDKYRYFACLLRARFEEHKNEKDMVKATQLLREAEEEFWHNQHPQPYVFPESPG |
.R....L...C....HRDKYR.FACL.R..FEE.KNEKD..KA...L..................P..P. | |
Retrocopy | RRCCSLLSGFCATASHRDKYRFFACLRRTQFEEYKNEKDLGKAASYLGRRRQNLAQSASTTMCLPPGRPS |
Parental | -GTSYERYECYKVPE-WCLDDW-HPSEKA-MYPDYFAKREQWKKLRRESWEREVKQLQEET |
.G...ER.ECYKVP..WC.DD..HPSEKA.MY.D.FAKR.QWKKL.RESWERE.KQLQE.T | |
Retrocopy | QGICSER*ECYKVPR<WCRDDL>HPSEKAAMYRDFFAKRGQWKKLGRESWEREAKQLQEDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .46 RPM |
SRP017611_liver | 0 .00 RPM | 17 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010022 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000015852 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012818 | 1 retrocopy | |
Equus caballus | ENSECAG00000018238 | 1 retrocopy | |
Felis catus | ENSFCAG00000004678 | 1 retrocopy |
retro_fcat_689 ,
|
Homo sapiens | ENSG00000147684 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015883 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017481 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003765 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015493 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001831 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005484 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030772 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018869 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020569 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009153 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021955 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006895 | 3 retrocopies |