RetrogeneDB ID: | retro_fcat_692 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:34168493..34169030(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSFCAG00000027765 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] |
Percent Identity: | 68.85 % |
Parental protein coverage: | 50.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYG-SGRGFGD |
Y.TI.GHNA.VRK.L.RQEMQE.QSSRSGRGGNFGFGDS.GGG.NFG.GP..NFRGGSD.Y..SG.GFGD | |
Retrocopy | YYTISGHNAKVRKVLCRQEMQEGQSSRSGRGGNFGFGDSPGGGRNFGQGPRNNFRGGSDAYE<SGCGFGD |
Parental | GYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSN |
G.NGYG....GGNF.GSPGYG.GR..YGGGGPG..NQ.GGY.GGYDN.GGGNYGSGNYN.FGNY...P.N | |
Retrocopy | GCNGYGRELTGGNFRGSPGYG*GRRRYGGGGPGCSNQDGGYRGGYDNCGGGNYGSGNYNGFGNYTY*PCN |
Parental | YGPMK-SGNFGGSRNMGG-PYGGGNYGPGGSGGSGGYGGRSRY |
YGPMK.SG.FGG.RNM.G.PYG...............GG...Y | |
Retrocopy | YGPMK<SGIFGGTRNM*G<PYGXXXXXXXXXXXXXXXGGSGGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 529 .22 RPM |
SRP017611_kidney | 0 .21 RPM | 784 .17 RPM |
SRP017611_liver | 0 .00 RPM | 458 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005726 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013832 | 15 retrocopies | |
Ciona intestinalis | ENSCING00000004062 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000000472 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012928 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005482 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018577 | 1 retrocopy | |
Felis catus | ENSFCAG00000000455 | 1 retrocopy | |
Felis catus | ENSFCAG00000010150 | 9 retrocopies | |
Felis catus | ENSFCAG00000012146 | 5 retrocopies | |
Felis catus | ENSFCAG00000027765 | 1 retrocopy |
retro_fcat_692 ,
|
Macropus eugenii | ENSMEUG00000001084 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007578 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004980 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026859 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011698 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006202 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000000709 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010417 | 1 retrocopy |