RetrogeneDB ID: | retro_fcat_706 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:63741552..63742081(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030453 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSFCAG00000003338 | ||
Aliases: | None | ||
Description: | ribosomal protein L13 [Source:HGNC Symbol;Acc:10303] |
Percent Identity: | 60.34 % |
Parental protein coverage: | 84.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | AQMFQKPARKIRRRKARQAKARRIAPRPA---SGPIRPIVRCPTVRYHTKVRAGRGFSLEEL-RVAGIHK |
A..F...A.K..R.KA.QA.A..I...P....SG...PI.RCP......KV.AG.GFSLEEL.RVAGI.K | |
Retrocopy | ATWFNQLAWKFCRHKAWQARASPITRIPCLDLSGSTWPIMRCPMRK*RNKV*AGWGFSLEEL<RVAGIDK |
Parental | KVARTIGISVDPRRRNKS-TESLQANVQRLKEYRSKLLLFPRRPAAPKKGDSSAEELKLATQLTGPVMPI |
KVA..IGISVDPRR.....TESLQANVQ.LKEY.SKL..F.R.P.APK...SSAE.LKL.TQLTG.V.P. | |
Retrocopy | KVA*AIGISVDPRRQTTT<TESLQANVQWLKEYCSKLIFFSRMPSAPKRENSSAEKLKLVTQLTGLVKPT |
Parental | RNVYKKEKARVITEEEKNFKAFASLRMARAHARLFGIRA |
.NVYKK.KA.VITEEEKNFK......MA.A...LF.I.A | |
Retrocopy | GNVYKKKKAGVITEEEKNFKVLTNIHMACANTLLFDIQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 212 .81 RPM |
SRP017611_liver | 0 .00 RPM | 97 .05 RPM |