RetrogeneDB ID: | retro_fcat_709 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:72729468..72730140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000007862 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.05 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SFKMSTVHEILCKLSLEGDHSTP-PSAYGSVKAYTNFDAERDALNIETAIKTKGVDEVTIVNILTNRSNE |
SF.MSTVH.ILC.LSLEGDHS.P.PSAY.SVKAYTNFDAE.DALNIE.AIKTK.V.E.TIV.ILTN...E | |
Retrocopy | SFMMSTVHKILCELSLEGDHSMP<PSAYESVKAYTNFDAEHDALNIEMAIKTKSVGEATIVKILTNLGDE |
Parental | QRQDIAFAYQRRTKKELTSALKSALSGHLETVILGL-LK-TPAQYDASELKASMKGLGTDEDSLIEIICS |
.R.DIAFA..RRTKKE..SALKSAL..HLETVI....LK.TPAQYDAS.L.ASMKGLGTDE.SLIEIIC. | |
Retrocopy | WREDIAFAHKRRTKKEFASALKSALFSHLETVIFWVYLK<TPAQYDAS*LNASMKGLGTDEGSLIEIICL |
Parental | RTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDAR-DLYDAGV |
RTNQELQEI...............IISDTSG.....MVAL.KGR.AEDGSVIDYEL..QDA..DL.DAGV | |
Retrocopy | RTNQELQEIKSLQGNVQDSSRD-PIISDTSGNVHNWMVALTKGRKAEDGSVIDYELFGQDAQ<DLCDAGV |
Parental | KRKGTDVPKWISIMTERSV |
KRKGT.VP..ISIMT.R.V | |
Retrocopy | KRKGTHVPECISIMTNRNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 124 .08 RPM |
SRP017611_liver | 0 .00 RPM | 84 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008055 | 2 retrocopies | |
Bos taurus | ENSBTAG00000009615 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016686 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012143 | 3 retrocopies | |
Equus caballus | ENSECAG00000012670 | 1 retrocopy | |
Felis catus | ENSFCAG00000007862 | 2 retrocopies |
retro_fcat_594, retro_fcat_709 ,
|
Macropus eugenii | ENSMEUG00000008980 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002464 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011604 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000762 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009952 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011401 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001276 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003719 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007705 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007888 | 2 retrocopies |