RetrogeneDB ID: | retro_fcat_720 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:94528217..94529077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030268 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.27 % |
Parental protein coverage: | 96.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLG-AGAKDELHIVEAEAMNYEG |
MEDS.D.DMSPL.PQ.YLFGCELKADKDYHF.VDN...EHQ.SLRTVSLG.AGAKD.L.IVEAE..N.EG | |
Retrocopy | MEDSVDVDMSPLKPQSYLFGCELKADKDYHFTVDNEGSEHQSSLRTVSLG<AGAKDGLYIVEAEIKNHEG |
Parental | SPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSIS |
SPIKV...TLK.SVQP..SLGG.EI.PPVVL.LKCGSGP.HI.GQHLVA.EEDAESED..E..VKL.SI. | |
Retrocopy | SPIKV---TLKISVQPIISLGGCEIIPPVVLWLKCGSGPMHICGQHLVAMEEDAESEDD*EGNVKLHSIA |
Parental | GKRSAPGSGSKVPQK-KVKLAADEDD-DEDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQK |
GK.S.PGSGSK.PQ..KVKLAADE.D..EDD..D..DE.DDD..F.........P.K........K...K | |
Retrocopy | GKSSVPGSGSKFPQN>KVKLAADEND<YEDD--DNNDEFDDDEAFASSKEIYEIPLKIYMAILAKK-CTK |
Parental | SNQNGKDSKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFR |
SNQ.GKDSK.S.PRSKGQE.FK.QEKT.KT..G.S..EDIKAK..ASIEKGG.LPKVEAKFIN.V.NCF. | |
Retrocopy | SNQKGKDSKSSRPRSKGQEFFKNQEKTTKTLTGSSFIEDIKAKVLASIEKGGFLPKVEAKFINSVSNCFW |
Parental | MTDQEAIQDLWQWRKS |
MTDQEAIQDLW.W.KS | |
Retrocopy | MTDQEAIQDLWKWKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 111 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 290 .52 RPM |
SRP017611_liver | 0 .00 RPM | 114 .43 RPM |