RetrogeneDB ID: | retro_fcat_743 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:5652490..5652785(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSFCAG00000008167 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722] |
Percent Identity: | 72.12 % |
Parental protein coverage: | 80.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DNDRTQLGAIYIDASCLTWEGQQFQGKAAI-VEKLSSL-PFQKIQHSITAQDHQPTPDSCIISMVVGQLK |
DN.R.QLG.I.ID.S....EGQQF.GK.A..VEKLSSL.PFQK.QH.I..QDH.P.PDSCIISMVVGQLK | |
Retrocopy | DNNRLQLGTICIDTSR---EGQQFLGKDAM<VEKLSSL<PFQKTQHGIVVQDHHPVPDSCIISMVVGQLK |
Parental | ADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALH |
...DPI.GFH..FLLKNINDAWVC.N.M.RLALH | |
Retrocopy | VGGDPIVGFHHTFLLKNINDAWVCSNGMIRLALH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .60 RPM |
SRP017611_liver | 0 .00 RPM | 14 .56 RPM |