RetrogeneDB ID: | retro_fcat_750 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:25341225..25341963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028424 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LNISFPA.GCQKLIEVDDE..LRTFYEKRMATEVAA.ALGEEWKGY.V.ISGGNDKQGFPMKQGVLT.GR | |
Retrocopy | LNISFPAIGCQKLIEVDDEHRLRTFYEKRMATEVAAEALGEEWKGYMVQISGGNDKQGFPMKQGVLTLGR |
Parental | VR-LLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI |
V..LLLSKGHSCYRP.R.GERK.KSVRGCIVDANLSVLNL.IVKKGEKDIPGLTDTTVP..LGPKRASRI | |
Retrocopy | VA<LLLSKGHSCYRPWRSGERKHKSVRGCIVDANLSVLNLNIVKKGEKDIPGLTDTTVPHPLGPKRASRI |
Parental | RKLFNLSKEDDVRQYVVRKPLNKEGKKPRTK-APKIQRLVTPRVLQHKRRRIAL-KKQRTKKNKEEAAEY |
RKLFNLSKEDDV.QYVVRKPLNKEGKK.RTK..PK.Q.LVT.RVLQHKRRRIAL.KK....KNKEEAAEY | |
Retrocopy | RKLFNLSKEDDVCQYVVRKPLNKEGKKLRTK<TPKVQCLVTSRVLQHKRRRIAL<KKECMQKNKEEAAEY |
Parental | AKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
AKLLAKRMKEAKEK.QEQIAKRRRL.SLRASTSK.ESS.K | |
Retrocopy | AKLLAKRMKEAKEKHQEQIAKRRRLTSLRASTSKPESSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .80 RPM | 82 .41 RPM |
SRP017611_kidney | 1 .86 RPM | 411 .51 RPM |
SRP017611_liver | 0 .71 RPM | 228 .06 RPM |