RetrogeneDB ID: | retro_fcat_761 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:68841888..68842374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDCA5 | ||
Ensembl ID: | ENSFCAG00000028197 | ||
Aliases: | None | ||
Description: | cell division cycle associated 5 [Source:HGNC Symbol;Acc:14626] |
Percent Identity: | 54.17 % |
Parental protein coverage: | 64.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RKPIVLKKIVAHTVKTPSVHTPR--RSPRIAFFLEKENNPSSKEPAREEPFKTSSVPITPTPTPVLCPLN |
RKPI.LK.I.AHTV..PS.H..R..R.....FFLE.EN.PSSK.PARE..FKT.S.P.TPT.TPVL.PLN | |
Retrocopy | RKPIILK-IMAHTVVIPSIHITRRSRAQGLLFFLE-ENKPSSKKPAREDLFKTCSIPGTPTATPVLYPLN |
Parental | VESNSREDLDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGSEDLARVSPV-RCSKLTEV |
VESNSR.....R........R.S.S.LETLGSASTST.G..S......L.G.....R.......SK.... | |
Retrocopy | VESNSRKERSGRQKLGNV**RQSSSQLETLGSASTSTTGHWSVLPW--L*GAAEVRRLGLICAVSKVNRS |
Parental | P-RVPVKPWAPDTTLPGIS-PPAVKEKR |
P.RVPVK.WAP.TT...IS..PAVKE.. | |
Retrocopy | P>RVPVKLWAPETTPSQIS<LPAVKEEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .34 RPM |
SRP017611_kidney | 0 .10 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002502 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019033 | 1 retrocopy | |
Felis catus | ENSFCAG00000028197 | 1 retrocopy |
retro_fcat_761 ,
|
Pteropus vampyrus | ENSPVAG00000007908 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046635 | 2 retrocopies |